species:   Scscl
pid:       PID1611
parent:    Ssc-milR-87
paralog:   
locus:     NW_001820832.1:432068-432113
matures:   ['UGGCUUGAUUGUAGUCUGG', 'CGACACUUGAGCUUGG']
srr:       SRR12527894
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram NW_001820832.1:432068-432113

14 out of bounds
16 alignments
4 proper strand
4 stranded perfect matches

********************        ******************
UUGGCUUGAUUGUAGUCUGGAUGCUAGUCUCGACACUUGAGCUUGG
..(((((((..((.(((.((((....)))).))))))))))))...
-UGGCUUGAUUGUAGUCUGG-------------------------- l=19 a=1 c
------------------------------CGACACUUGAGCUUGG l=16 a=0 c*
-UGGCUUGAUUGUAGUCUGG-------------------------- l=19 a=1 ma
------------------------------CGACACUUGAGCUUGG l=16 a=0 ma*

UUGGCUUGAUUGUAGUCUG--------------------------- l=19 a=1 
-UGGCUUGAUUGUAGUCUGG-------------------------- l=19 a=1 (c,ma)
----------UGUAGUCUGGAUGCUAGUCUCGA------------- l=23 a=1 
-----------------UGGAUGCUAGUCUCGACACUU-------- l=21 a=1 

mb-01011
ax-1011001
ku-01
ss-100010011100
fn-101
